o
    Ge.                     @   s  d dl mZmZmZ d dlmZ d dlZd dlZd dl	m
Z
mZmZmZ d dlmZ d dlmZ d dlmZ d dlmZmZmZmZmZmZmZ d dlmZmZ d	d
lmZ G dd dZ G dd dZ!G dd dZ"G dd dZ#G dd dZ$G dd dZ%G dd dZ&dS )    )divisionprint_functionabsolute_import)productN)assert_assert_equalassert_allcloseassert_almost_equal)raises)distributions)epps_singleton_2sampcramervonmises_cdf_cvmcramervonmises_2samp_pval_cvm_2samp_exactbarnard_exactboschloo_exact)mannwhitneyu
_mwu_state   )check_named_resultsc                   @   D   e Zd Zdd Zdd Zdd Zdd Zd	d
 Zdd Zdd Z	dS )TestEppsSingletonc                 C   sJ   t g d}t g d}t||\}}t|ddd t|ddd d S )N)
gffffffֿgffffff@gGz?\(\?ffffff?gQ@gq=
ףp?gGzgGz׿gp=
#(@)
gffffffg333333ÿgףp=
@g      
@gGz@g)\(@g      @g(\@g(\ @333333!@gHzG.@r   decimalgQ,r?   )nparrayr   r	   selfxywp r'   j/var/www/html/SPIRAL.web.tool/spiral_venv/lib/python3.10/site-packages/scipy/stats/tests/test_hypotests.pytest_statistic_1   s
   z"TestEppsSingleton.test_statistic_1c                 C   sB   t d}t d}t||\}}t|ddd t|ddd d S )	N)r   r      r*   r*   r*   r   r   r   r         r,   r,   r,      
   r.   r.   r.   )r.   r+   r   r,   r.   r.   r   r,   r-      r.   r   r   r/   r      r   r,   r0   r.   g!@MbP?atolg&J?r   r   )r   r    r   r   r	   r!   r'   r'   r(   test_statistic_2#   s
   

z"TestEppsSingleton.test_statistic_2c           	      C   s   t jd t dt d}}tt|t|\}}tt|t|\}}t||\}}t||  ko8|kn   t||  koI|k d S    d S )Ni        )r   randomseedaranger   listtupler   )	r"   r#   r$   w1p1w2p2w3p3r'   r'   r(   test_epps_singleton_array_like-   s   &z0TestEppsSingleton.test_epps_singleton_array_likec                 C   s"   dt d}}ttt|| d S )Nr   r*   r   r+   r.   )r   r9   assert_raises
ValueErrorr   r"   r#   r$   r'   r'   r(   test_epps_singleton_size8   s   z*TestEppsSingleton.test_epps_singleton_sizec                 C   s\   dddddt jft d}}ttt|| t ddddddt jf}}ttt|| d S )Nr   r*   r   r+   r,   r.   )r   infr9   rD   rE   r   nanrF   r'   r'   r(   test_epps_singleton_nonfinite=   s   z/TestEppsSingleton.test_epps_singleton_nonfinitec                 C   s$   t ddd}ttt|| d S )Nd   r   )r   r9   reshaperD   rE   r   r"   r#   r'   r'   r(   test_epps_singleton_1d_inputD   s   z.TestEppsSingleton.test_epps_singleton_1d_inputc                 C   s2   t dt d}}t||}d}t|| d S )N   r5   )	statisticpvalue)r   r9   r   r   )r"   r#   r$   res
attributesr'   r'   r(   
test_namesH   s   
zTestEppsSingleton.test_namesN)
__name__
__module____qualname__r)   r4   rB   rG   rJ   rO   rU   r'   r'   r'   r(   r      s    
r   c                   @   sd   e Zd Zdd Zdd Zdd Zdd Zd	d
 Zdd Zdd Z	dd Z
dd Zdd Zdd ZdS )TestCvmc                 C       t tg ddg ddd d S )N)gy;i?g#^?gE>?gD
)?r+   {Gz?皙?      ?g+?-C6?r2   r   r   r"   r'   r'   r(   
test_cdf_4S   
   
zTestCvm.test_cdf_4c                 C   rZ   )N)g8*5?g@߾?gHm?g%1 ?r.   )r\   r]   r^   g333333?r_   r2   r`   ra   r'   r'   r(   test_cdf_10Y   rc   zTestCvm.test_cdf_10c                 C   rZ   )N)g}tg?g`?gI5o?gׁsF?  r[   r_   r2   r`   ra   r'   r'   r(   test_cdf_1000_   rc   zTestCvm.test_cdf_1000c                 C   s   t tg dg ddd d S )N)a+e?+?&pn?+MJA?r[   r_   r2   r`   ra   r'   r'   r(   test_cdf_infe   s
   

zTestCvm.test_cdf_infc                 C   s4   t tddgdddg t tddgdddg d S )	NgX(~$?gUUUUU5f@i  r   r   gaah?g"@   )r   r   ra   r'   r'   r(   test_cdf_supportk   s   zTestCvm.test_cdf_supportc                 C   s$   t tg ddtg ddd d S )N)rg   rh   ri   rj   rK   i'  r_   r2   r`   ra   r'   r'   r(   test_cdf_large_np   s
   

zTestCvm.test_cdf_large_nc                 C   sL   t dtdd  k odk n   t dtd  k o dk  d S    d S )NgwJ?gt@re         ?)r   r   ra   r'   r'   r(   test_large_xw   s   "*zTestCvm.test_large_xc                 C   s<   d}t t|d d}tt|j|dk t|jd d S )N   皙?normro   r   )r   r   onesr   r   rQ   r   rR   )r"   nrS   r'   r'   r(   
test_low_p   s   zTestCvm.test_low_pc                 C   s@   t dd}ttt|d tttdgd tttdd d S )Nr.   r*   r,   rs         ?r'   )r   r9   rM   rD   rE   r   rN   r'   r'   r(   test_invalid_input   s   zTestCvm.test_invalid_inputc                 C   s   t g dd}t|jddd t|jddd t g ddd}t|jddd t|jd	dd t g d
d}t|jddd t|jddd d S )N)g333333r*   r   g?r+   皙?333333?rs   gZ	%q?gư>r2   gEж?)r   rx   g!O!W*?gz"W`?)	r   r*   r,   ffffff?gQ?      ?      @exponge.?gnz\(r?)r   r   rQ   rR   )r"   rS   r'   r'   r(   test_values_R   s   zTestCvm.test_values_Rc                 C   s|   t dd}}t|tjj}t|d}t|j|jf|j|jf t|tj	j|}t|d|}t|j|jf|j|jf d S )Nr,   )r|   ffffff?r   beta)
r   r9   r   r   r   cdfr   rQ   rR   r   )r"   r#   argsr1r2r'   r'   r(   test_callable_cdf   s   
zTestCvm.test_callable_cdfN)rV   rW   rX   rb   rd   rf   rk   rm   rn   rp   rv   ry   r   r   r'   r'   r'   r(   rY   O   s    	rY   c                   @   s,  e Zd Zdd Zdd Zg dZg dZddd	d
gddd	dgddd	dgddd	dgddd	dgddd	dggZej	
dedd ZddddgddddgddddgddddgddddgddddggZej	
dedd  Zd!d" Zg d#g d$g d%d&Zg d'g d(g d)g d*d+Zg d,g d-g d.g d/g d0d1Zg d2g d3g d4g d5g d6g d7d8Zd9d: Zd;d< Zd=d> Zddd	d?gddd	d@gddd	dAgddd	d?gddd	d@gddd	d?ggZej	
dBedCdD ZdEdF Zej	
dGddgdHdI ZdJdK Zg d+dLdMdNdOejdLdPdQdRdRdSgdTdUfg d+dLdMdNdOejejdPdQdRdRdSgdVdWfdQdPejdRgdLdMdNdOejdLdPdQdRdRdSgdXdYfdQdPejdRgdLdMdNdOejejdPdQdRdRdSgdZd[fdQejejdRgdLdMdNdOejejdPdQdRdRdSgd\d]fgZej	
d^ed_d` Zg dag dbg dcg ddg deg dfg dgg dhg dig	Zej	
djedkdl Z dmdn Z!dodp Z"g d&dqdrgddsgg d&dqdrgddsgg d&dqdrgddtgg d&dPgddugg d&dPgddugg d&dPgddvgdQdPgdQdPgddwgdQdPgdQdPgddwgdQdPgdQdPgddxgg	Z#ej	
g dye#dzd{ Z$d|S )}TestMannWhitneyUc                 C   s  t ddg}t ddg}ttdd tg | W d    n1 s$w   Y  ttdd t|g  W d    n1 s?w   Y  ttdd tt jdg| W d    n1 s]w   Y  ttdd t||d	d
 W d    n1 szw   Y  ttdd t||d	d W d    n1 sw   Y  ttdd t||dd W d    n1 sw   Y  ttdd t||d	d W d    d S 1 sw   Y  d S )Nr   r*   r   r+   `x` and `y` must be of nonzeromatch`x` and `y` must not containz`use_continuity` must be oneekki)use_continuityz`alternative` must be one ofalternativez`axis` must be an integerrx   axisz`method` must be one ofmethod)r   r    rD   rE   r   rI   rF   r'   r'   r(   test_input_validation   s.   "z&TestMannWhitneyU.test_input_validationc                 C   s  t jd d}t j|d }t j|d }t||}t||dd}t||dd}|j|jks3J |j|jks;J t j|d }t j|d }t||}t||dd}t||dd}|j|jksfJ |j|jksnJ t||}t||dd}t||dd}|j|jksJ |j|jksJ t j|d }t j|d }t||}t||dd}t||dd}|j|jksJ |j|jksJ t j|d }t j|d }|d |d< t||}t||dd}t||dd}|j|jksJ |j|jksJ d S )Nr   r0   
asymptoticr   exactr   )r   r7   r8   randr   rR   )r"   ru   r#   r$   autor   r   r'   r'   r(   	test_auto   sH   




zTestMannWhitneyU.test_auto)gm9Aj@g+H3[@gi>s@)g#hA{@glz@gcDf@gǳ*h@gZA@gI9^YQa@g`@g՞p@g:q@g&@gZ|@g`r@gMc3g@	two-sidedr   r   r   )   
+?less)r   
+?greater)r   缌%c?r   )r   g9:?)r   g9:?)r   g*::?)kwdsexpectedc                 C   s$   t | j| jfi |}t|| d S N)r   r#   r$   r   r"   r   r   rS   r'   r'   r(   
test_basic  s   zTestMannWhitneyU.test_basicT)r   r   )   r   )r   r   )r   r   F)r   gl,KNh?)r   giژ?)r   gl,KNh?c                 C   s(   t | j| jfddi|}t|| d S )Nr   r   )r   r$   r#   r   r   r'   r'   r(   test_continuity+  s   z TestMannWhitneyU.test_continuityc           	      C   s   g d}t g d}t g dd }t g dd }|d || || ||| || |d g}t||ddd}g d	}g d
}t|j| t|j| d S )NrC   r   r*   r   r+   r,   )r   r   r   r   r   r\   )r   r   r   r   r   rL   r   )r   r   )r.   	         !@r0   r   r/   r-   )r   g]U?g[?gi\?gZX<_?gx.?g 
?)r   r    r   r   rQ   r   rR   )	r"   r#   y0dydy2r$   rS   
U_expected
p_expectedr'   r'   r(   test_tie_correct9  s   *z!TestMannWhitneyU.test_tie_correct)g      ?r^   g      ?)rz   皙?皙?r{   )r]   rz   r   r   r^   g?r   r*   r   )r   r   r{   )gx&?g/$?gJ+?r   r{   )y&1?v/?gv/?r   gjt?~jt?ʡE?)	gy&1?gV-?r   rz   gS?gv?gʡE?g'1Z?gm?rC   )gK7A`?gZd;O?r^   gMbX?)Mb?RQ?RQ?M?r   r   )	g;On?;On?V-?g      ?gJ+?r   gx&?r^   gCl?)Mb?Mb?Mb?gy&1?r   M?g|?5^?gn?g\(\?!rh?K7?)Mbp?r   r   r   ~jt?g333333?g"~j?ףp=
?gzG?K7?gGz?gl?r^   gI+?r   )r   r   g1Zd?r   )r   r   r   1Zd?g%C?r   r   )
g~jt?g~jt?r   gsh|??gS㥛?r   r   g+?r   r   )g{Gzt?r\   g~jt?gL7A`?r   gjt?gPn?gI+?gX9v?gQ?gMb?gsh|??gK7A`?)Mb`?r   g;On?gQ?g9v?gˡE?gT㥛 ?gbX9ȶ?grh|?gQ?r   gx&?gv/?gMbX?g(\?gQ?)r1   r   r   r   g9v?g/$?r   r   gL7A`?g
ףp=
?gQ?r   gK7?g`"?g7A`?r   gV-?gjt?gˡE?)r   r*   r   r+   r,   r-   c           
   	   C   s   | j | j| j| jd}| D ]f\}}| D ]]\}}tdt|}tt	j
|||d|dd td|| d }tt	j
|||dt	j|||d t	j|||d d t	j|||d}t||d d d  t	j|||d}	t||	 qqd S )N)r   r+   r,   r-   r   )kmru   r1   r2   r   rL   )pn3pn4pm5pm6itemsr   r9   lenr   r   r   sfpmf)
r"   p_tablesru   tabler   r&   uu2r   pmf2r'   r'   r(   test_exact_distributioni  s&   z(TestMannWhitneyU.test_exact_distributionc                 C   s   t jd t jd}t jd}t||dd}t||dd}|j|jks(J t |j|j dks5J t jd}t jd}t||dd}t||dd}|j|jksWJ t |j|j dk sdJ d S )	Nr   r,   r   r   r   r\   (   r1   )r   r7   r8   r   r   rQ   absrR   r"   r#   r$   res1res2r'   r'   r(   test_asymptotic_behavior  s   z)TestMannWhitneyU.test_asymptotic_behaviorc                 C   sr   t g dddgddd}t g dddgddd}t|j|j |jdks&J t g dddgd	dd}t|d
 d S )Nr   rx         @r   r   r   r   r^   r   )r   r   )r   r   rR   )r"   res_lres_grS   r'   r'   r(   test_exact_U_equals_mean  s   z)TestMannWhitneyU.test_exact_U_equals_meanr   r   )r   r^   )r   g郡E?)r   resultc                 C   s   t tdi || d S )Nr   r*   )r   r*   )r   r   )r"   r   r   r'   r'   r(   test_scalar_data  s   z!TestMannWhitneyU.test_scalar_datac                 C   sH   t tddddd t tddddd t tddddddtjf d S )	Nr   r   r   )r^   r   r   F)r   r   r^   )r   r   r   rI   ra   r'   r'   r(   test_equal_scalar_data  s   
z'TestMannWhitneyU.test_equal_scalar_datar   c                 C   sz  t jd d}d\}}t j|dd}t jd|ddd }t||||d	}d
}|jj|ks1J |jj|ks9J t ||dt ||d}}|d }|j	|j	ksTJ t 
|||f }t 
|||f }|jd d |ksqJ |jd d |ks|J t |}	t |}
tdd |D  D ]}|| }|| }t|||d}|j|	|< |j|
|< qt j|j|
 t j|j|	 d S )Nr   )r/   r.   r   r0   r-   r   rz   )r   r   )r-   r   r0   rL   )N.c                 S   s   g | ]}t |qS r'   )range).0ir'   r'   r(   
<listcomp>  s    z8TestMannWhitneyU.test_gh_12837_11113.<locals>.<listcomp>r   )r   r7   r8   r   r   rR   shaperQ   moveaxisndimbroadcast_tozerosr   testingr   )r"   r   r   r   ru   r#   r$   rS   r   
statisticspvaluesindicesxiyitempr'   r'   r(   test_gh_12837_11113  s4   


z$TestMannWhitneyU.test_gh_12837_11113c                 C   s   g d}g d}t ||}tj|d< t ||}t|j|j t|j|j tj|d< ttdd t || W d    d S 1 sAw   Y  d S )NrC   )r   r-   r/   r0   r   r   r*   r   r+   r+   r,   r+   r   r   )	r   r   rH   r   rQ   rR   rI   rD   rE   r   r'   r'   r(   test_gh_11355  s   



"zTestMannWhitneyU.test_gh_11355r   r-   r/   r0   r*   r   r+   r,   r.   g+zQ?r   g}$k\?g     1@g!˛G*?r   g,s?g     8@gFHQ?)r#   r$   rQ   rR   c                 C   s2   t ||dd}t|j|dd t|j|dd d S )Nr   r   -q=r2   )r   r   rQ   rR   )r"   r#   r$   rQ   rR   rS   r'   r'   r(   test_gh_11355b  s   zTestMannWhitneyU.test_gh_11355b)Tr   r   g&?)Tr   r   gO?)Tr   r   gO?)Fr   r   g9@VN!x?)Fr   r   g9M>?)Fr   r   g9M>?)Tr   r   g?UV?)Tr   r   gߺVJH?)Tr   r   gVJH?)r   r   r   
pvalue_expc           	      C   s:   d}d}d}t |||||d}t|j| t|j| d S )N#   )
rr   g(\?g=
ףp=?gp=
ף?g333333?gGz?g(\?g=
ףp=?r   g\(\?)gffffff?g)\(?r   gGz?g\(\?r   r   r   )r   r   rQ   r   rR   )	r"   r   r   r   r  statistic_expr#   r$   rS   r'   r'   r(   test_gh_9184%  s   zTestMannWhitneyU.test_gh_9184c                 C   s<   t tdd tg g  W d    d S 1 sw   Y  d S )Nr   r   )rD   rE   r   ra   r'   r'   r(   test_gh_6897D  s   "zTestMannWhitneyU.test_gh_6897c                 C   sx   t t jt jt jt jt jg}t t jt jt jt jt jg}ttdd t|| W d    d S 1 s5w   Y  d S )Nr   r   )r   r    rI   rD   rE   r   )r"   abr'   r'   r(   test_gh_4067I  s
   "zTestMannWhitneyU.test_gh_4067rx   r   )r   ga׀}?)r   ro   )rx   g?h?)rx   r   )r*   g5&#\?)r*   r   )r#   r$   r   r   c                 C   s$   t ||d|dd}t||dd d S )NTr   r  r   )rtol)r   r   )r"   r#   r$   r   r   rS   r'   r'   r(   test_gh_2118`  s   
zTestMannWhitneyU.test_gh_2118N)%rV   rW   rX   r   r   r#   r$   cases_basicpytestmarkparametrizer   cases_continuityr   r   r   r   r   r   r   r   r   cases_scalarr   r   r   r   r   rH   cases_11355r   
cases_9184r  r  r	  
cases_2118r  r'   r'   r'   r(   r      s   5




+



r   c                   @   r   )TestSomersDc                 C   sn  g d}g d}d}t ||}t|j|d dd t|j|d dd g d}g d	}d}t ||}t|j|d dd t|j|d dd g d
}g d}d}t ||}t|j|d dd t|j|d dd td}td}d}t ||}t|j|d dd t|j|d dd td}tg d}d}t ||}t|j|d dd t|j|d dd td}tdd d d }d}t ||}t|j|d dd t|j|d dd td}tg d}d}t ||}t|j|d dd t|j|d dd g d}g d}d}t ||}t|j|d dd t|j|d dd t g dg d}t|jtj t|jtj t g dg d}t|jtj t|jtj t g dg d}t|jtj t|jtj t dgdg}t|jtj t|jtj t g g }t|jtj t|jtj td}td}t	t
t j|| d S )N)r,   r*   r   r   r-   r+   r/   r0   )r,   r*   r-   r   r   r0   r/   r+           ro   r   V瞯<r2   r   )	r   r,   r*   r   r   r-   r+   r/   r0   )	r,   r*   r   r-   r   r   r0   r/   r+   )r,   r*   r   r   r-   r+   r/   )r,   r*   r-   r   r   r/   r+   )g+$I$I¿g=/3n+?r.   ro   r   )
r   r*   r   r   r+   r-   r,   r/   r0   r   )gs'}'?r  rL   )g      r   )
r   r/   r0   r-   r,   r   r+   r*   r   r   )g}'}'r  )rq   r*   r   rq   r*   )r   r+   r/   r   r   )      g.ʂ?)r*   r*   r*   )r*   r   r*   g      $@g      4@)statssomersdr   rQ   rR   r   r9   r    rI   rD   rE   )r"   r#   r$   r   rS   x1x2r'   r'   r(   test_like_kendalltauk  s   







z TestSomersD.test_like_kendalltauc                 C   s   g d}g d}d}d}d}t ||}t|j|dd t|j|dd t|jjd	 t ||}t|j|dd t|j|dd t|jjd
 d S )N)r   r   r   r*   r*   r*   r*   r*   r   r   r   r*   r*   r*   r*   r*   r*   r*   r   r   r   r   r   r   )r   r   r   r   r   r   r   r   r   r   r*   r*   r*   r*   r*   r*   r*   r*   r*   r*   r*   r*   r*   r*   gCE]t?g^_?gO((Ƿ?r  r2   r_   )r   r*   )r*   r   )r  r  r   rQ   rR   r   r   r   )r"   r#   r$   d_crd_rcr&   rS   r'   r'   r(   test_asymmetry  s   zTestSomersD.test_asymmetryc                 C   s   t ddgddgddgddgddgg}|j}d}tt|j| t d	d
gdd
gd
dgg}d\}}tt|j| tt|jj| t d	d
gd
dgdd
gg}d}tt|jj| d S )Nr0   r*   r-   r,   r   r+   r   gHHHHHH?   r   U   r5   )gM&w?ro   gtE]t)r   r    Tr   r  r  rQ   )r"   r   dyxdxyr'   r'   r(   test_somers_original  s   (z TestSomersD.test_somers_originalc                 C   s6  d}d}t |}t jd tjj|t || d|}t	|}t j
|dt |d dd}t	|}t j
|dt |d dd}t	|}	t j
|dt |d d dd}
t	|
}t|jdd	d
 t|j|j t|j|	j t|j|j t|jdd	d
 t|j|j t|j|	j t|j|j d S )NrK   r+   r-   r   r&   r*   r   r   gayr  r2   gPj$?)r   prodr7   r8   r  multinomialrvsrt   rM   r  insertr   r   rQ   rR   )r"   Nr   sizesrS   s2r   s3res3s4res4r'   r'   r(   *test_contingency_table_with_zero_rows_cols	  s(   
 


 
z6TestSomersD.test_contingency_table_with_zero_rows_colsc           	      C   s  d}d}t |}t jd tjj|t || d|}|d }d}t	t
|d t| W d    n1 s;w   Y  |d }d	}t	t
|d t| W d    n1 s\w   Y  d
}t	t
|d tg g W d    n1 szw   Y  t	t
|d tdgg W d    n1 sw   Y  t d}t	t
|d t| W d    n1 sw   Y  d|d< t	t
|d t| W d    d S 1 sw   Y  d S )NrK   r)  r   r*  r*   z:All elements of the contingency table must be non-negativer   r\   z5All elements of the contingency table must be integerz?At least two elements of the contingency table must be nonzero.r   )r   r   r   )r   r+  r7   r8   r  r,  r-  rt   rM   rD   rE   r  r   )	r"   r/  r   r0  r1  s5messages6s7r'   r'   r(   test_invalid_contingency_tables(  s<   
 
"z+TestSomersD.test_invalid_contingency_tablesc                 C   sb   g d}ddt jg}g d}ddt j g}t||}t||}t|j|j t|j|j d S )Nr   rL   g @)r   r*   r   r   r  )r   rH   r  r  r   rQ   rR   )r"   r#   r  r$   y2rS   r   r'   r'   r(   test_only_ranks_matterK  s   z"TestSomersD.test_only_ranks_matterc                 C   s6   t d}t d}t||}t|jt d d S )Nr.   )r   r9   r  r  r   r   eye)r"   r#   r$   rS   r'   r'   r(   test_contingency_table_returnV  s   

z)TestSomersD.test_contingency_table_returnN)
rV   rW   rX   r  r"  r(  r7  r<  r>  r@  r'   r'   r'   r(   r  i  s    o#r  c                   @   s  e Zd ZdZejdddgddggdfdd	gd
dggdfd	dgdd	ggdfddgddggdfddgddggdfddgddggdfddgddggdfddgddggdfddgdd	ggdfdd	gddggdfd	dgdd	ggdfgd d! Zejdddgddggd"fdd	gd
dggd#fd	dgdd	ggd$fddgddggd%fddgddggd&fddgddggd'fddgddggd(fddgddggd)fddgdd	ggd*fdd	gddggd+fd	dgdd	ggd$fgd,d- Zd.d/ Z	ejdddgddggd0fgd1d2 Z
ejdddgddggd3ejffddgddggd3ejffgd4d5 Zejdd	dgdd	ggd6fdd7gd8dggd9fd:d;gd<dggd=fgejd>d?d@gdAdB ZdCS )DTestBarnardExactz8Some tests to show that barnard_exact() works correctly.input_sample,expected+   r   r.   '   )gXyq@g{2s&Q7?rK   r*   re   r,   )gllgEA]0K?r/   r0   )*)1%g_  ?r   )g_c1?g= ?   rP   )g5PyQgQ@2?r   r#  )ggJ"?)g_c1gwݝل?r   r+   )g7@g      ?r   )g~t,?3O?r-   )gr?~CY7?c                 C   s(   t |}|j|j}}t||g| dS )zThe expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-6 :
        ```R
        library(Barnard)
        options(digits=10)
        barnard.test(43, 40, 10, 39, dp=1e-6, pooled=TRUE)
        ```
        Nr   rQ   rR   r   r"   input_sampler   rS   rQ   rR   r'   r'   r(   test_precisea  s   zTestBarnardExact.test_precise)g7\@gA2?)gXS;gh?)g>!Ɏg6  ?)gSy@?g^F?)g-gXI#?)gaЍgo?)gb]?gFugH	?)g6ҭ@g      ?)gi(	rG  )gNXzrH  c                 C   s,   t |dd}|j|j}}t||g| dS )zThe expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-6 :
        ```R
        library(Barnard)
        options(digits=10)
        barnard.test(43, 40, 10, 39, dp=1e-6, pooled=FALSE)
        ```
        F)pooledNrI  rJ  r'   r'   r(   test_pooled_param~  s   z"TestBarnardExact.test_pooled_paramc                 C     d}t t|d tddgddggdd W d    n1 sw   Y  d	}t t|d ttd
dd W d    n1 sBw   Y  d}t t|d tddgddgg W d    n1 sdw   Y  d}t t|d tddgddggd W d    d S 1 sw   Y  d S )N7Number of points `n` must be strictly positive, found 0r   r   r*   r   r+   r   ru   ,The input `table` must be of shape \(2, 2\).r-   *All values in `table` must be nonnegative.rL   zI`alternative` should be one of {'two-sided', 'less', 'greater'}, found .*not-correct)rD   rE   r   r   r9   rM   r"   	error_msgr'   r'   r(   test_raises  $   "zTestBarnardExact.test_raisesr  c                 C   6   t |}|j|j}}t||d  t||d  d S Nr   r   r   rQ   rR   r   rJ  r'   r'   r(   test_edge_cases  s   z TestBarnardExact.test_edge_casesro   c                 C   rY  rZ  r[  rJ  r'   r'   r(   test_row_or_col_zero     z%TestBarnardExact.test_row_or_col_zero)rE  gE\/??   i,  )ggQ5r     r6   i  )g&X}>r  r   r   r   c           	      C   sf   |\}}|dkrt |dddddf }| }t||d}|j|j}}t||g||gdd dS )a  
        "The expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-6 :
        ```R
        library(Barnard)
        options(digits=10)
        a = barnard.test(2, 7, 8, 2, dp=1e-6, pooled=TRUE)
        a$p.value[1]
        ```
        In this test, we are using the "one-sided" return value `a$p.value[1]`
        to test our pvalue.
        r   NrL   r   Hz>r2   )r   r    r   rQ   rR   r   )	r"   rK  r   r   expected_statless_pvalue_expectrS   rQ   rR   r'   r'   r(   test_less_greater  s   
z"TestBarnardExact.test_less_greaterN)rV   rW   rX   __doc__r  r  r  rL  rN  rW  r\  r   rI   r]  rd  r'   r'   r'   r(   rA  ^  sr    



rA  c                   @   s  e Zd ZdZdZejdddgddggdfdd	gd
d
ggdfddgddggdfd
dgd
d	ggdfddgd	dggdfdd	gddggdfddgddggdfddgddggdfd
dgddggdfg	dd Zejdddgd
dggd fddgddggd!fdd	gd
d
ggd"fdd#gddggd$fddgddggd%fddgd	dggd&fdd	gddggdfddgd'dggdfddgddggd!fddgddggd(fd
dgddggd)fgd*d+ Z	ejdddgd
dggd,fddgddggd-fdd	gd
d
ggd.fddgddggd/fddgd	dggd0fdd	gddggd1fddgddggd-fddgddggd2fgd3d4 Z
d5d6 Zejdddgdd
ggejejffddgd
dggejejffgd7d8 Zd9S ):TestBoschlooExactz9Some tests to show that boschloo_exact() works correctly.ra  rB  r*   r/   r0   )<vB\?g/??r,   r   r.   )gM?gA>?r   rP   r#  )_VѶ?g֭?)u %?gc'?r   r+   )r   r   r   )r^   g      ?rq   )+f?gXc}v?   %   )gZыD?ggi]?c                 C   2   t |dd}|j|j}}t||g|| jd dS )a  The expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-8 :
        ```R
        library(Exact)
        options(digits=10)
        data <- matrix(c(43, 10, 40, 39), 2, 2, byrow=TRUE)
        a = exact.test(data, method="Boschloo", alternative="less",
                       tsmethod="central", np.interval=TRUE, beta=1e-8)
        ```
        r   r   r2   Nr   rQ   rR   r   ATOLrJ  r'   r'   r(   	test_less  s   zTestBoschlooExact.test_lessrC  r   rD  )k\2?g0,%?)gKv?gN3?)ri  g'&5?rF  )gw@_?g7?)gi{?gɑ)z?)օa?g1|?r-   )gY<;?gND?)ge?gG`?c                 C   rm  )a  The expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-8 :
        ```R
        library(Exact)
        options(digits=10)
        data <- matrix(c(43, 10, 40, 39), 2, 2, byrow=TRUE)
        a = exact.test(data, method="Boschloo", alternative="greater",
                       tsmethod="central", np.interval=TRUE, beta=1e-8)
        ```
        r   r   r2   Nrn  rJ  r'   r'   r(   test_greater  s   zTestBoschlooExact.test_greater)rq  gqQS,5?)rg  gG?/??)ri  gKE`?)rh  ghr1ֽ?)rr  grfb?)r^   g      ?)rj  gP:pRv?c                 C   s4   t |ddd}|j|j}}t||g|| jd dS )a  The expected values have been generated by R, using a resolution
        for the nuisance parameter of 1e-8 :
        ```R
        library(Exact)
        options(digits=10)
        data <- matrix(c(43, 10, 40, 39), 2, 2, byrow=TRUE)
        a = exact.test(data, method="Boschloo", alternative="two.sided",
                       tsmethod="central", np.interval=TRUE, beta=1e-8)
        ```
        r   @   )r   ru   r2   Nrn  rJ  r'   r'   r(   test_two_sided1  s   z TestBoschlooExact.test_two_sidedc                 C   rO  )NrP  r   r   r*   r   r+   r   rQ  rR  r-   rS  rL   zK`alternative` should be one of \('two-sided', 'less', 'greater'\), found .*rT  )rD   rE   r   r   r9   rM   rU  r'   r'   r(   rW  N  rX  zTestBoschlooExact.test_raisesc                 C   rY  rZ  )r   rQ   rR   r   rJ  r'   r'   r(   r]  h  r^  z&TestBoschlooExact.test_row_or_col_zeroN)rV   rW   rX   re  ro  r  r  r  rp  rs  ru  rW  r   rI   r]  r'   r'   r'   r(   rf    sl    


rf  c                   @   s^   e Zd Zdd Zdd Zdd Zejdg dd	d
 Z	dd Z
dd Zdd Zdd ZdS )TestCvm_2sampc                 C   sH  t dd}t d}d}tjt|d t|| W d    n1 s&w   Y  tjt|d t|| W d    n1 sBw   Y  d}tjt|d tg | W d    n1 s`w   Y  tjt|d t|dg W d    n1 s}w   Y  d}tjt|d t||d	 W d    d S 1 sw   Y  d S )
Nr.   rw   r,   z#The samples must be one-dimensionalr   z/x and y must contain at least two observations.r   z/method must be either auto, exact or asymptoticxyz)r   r9   rM   r  r
   rE   r   )r"   r#   r$   msgr'   r'   r(   ry   v  s(   
"z TestCvm_2samp.test_invalid_inputc                 C   sN   g d}g d}t ||}t t|t|}t|j|jf|j|jf d S )N)r*   r   r+   r/   r-   )r   r   rq      )r   r   r    r   rQ   rR   r"   r#   r$   r   r   r'   r'   r(   test_list_input  s
   
zTestCvm_2samp.test_list_inputc                 C   s>   g d}g d}t ||}t|jddd t|jddd d S )N)	gffffff@g @r   gffffff!@g"@g#@g333333$@g333333%@gffffff&@)g@g@g@g      @g333333@gffffff @g333333"@g#@g%@g&@g      '@g(@g      )@g*@g333333-@gS㥛?r1   r2   g
ףp=
?r\   )r   r   rQ   rR   r"   r#   r$   rr'   r'   r(   test_example_conover  s
   
z"TestCvm_2samp.test_example_conoverzstatistic, m, n, pval))i  r,   r-   gcj`?)ii  r/   r/   gtE]t?)i@  r+   r-   g88?)i  r-   r/   gXwS?c                 C   s   t t|||| d S r   )r   r   )r"   rQ   r   ru   pvalr'   r'   r(   test_exact_pvalue  s   	zTestCvm_2samp.test_exact_pvaluec                 C   s   t jd tjjdd}tjjdd}t||}td|j  k o$dk n   t||d }td|j  k o=dk  d S    d S )Ni  i@B )r0  i r   r   rz   )	r   r7   r8   r   rs   r-  r   r   rR   r|  r'   r'   r(   test_large_sample  s   
(zTestCvm_2samp.test_large_samplec                 C   sd   t jd t jd}t jd}t||dd}t||dd}t|j|j t|j|jdd d S )	Nr   r/   r0   r   r   r   r\   r2   )	r   r7   r8   r   r   r   rQ   r   rR   rz  r'   r'   r(   test_exact_vs_asymptotic  s   z&TestCvm_2samp.test_exact_vs_asymptoticc                 C   st   t d}g d}t||dd}t||dd}t|j|j t d}t||dd}t||dd}t|j|j d S )Nr.   )r^   g@g333333*@r   r   r   r}   r   )r   r9   r   r   rR   rz  r'   r'   r(   test_method_auto  s   

zTestCvm_2samp.test_method_autoc                 C   sV   t d}t||}t|j|jfd t|d d |d d }t|j|jfd d S )NrF  r  r+   )r   r9   r   r   rQ   rR   )r"   r#   rS   r'   r'   r(   test_same_input  s
   

zTestCvm_2samp.test_same_inputN)rV   rW   rX   ry   r{  r~  r  r  r  r  r  r  r  r  r'   r'   r'   r(   rv  u  s    

	rv  )'
__future__r   r   r   	itertoolsr   numpyr   r  numpy.testingr   r   r   r	   r
   rD   scipy.statsr  r   scipy.stats._hypotestsr   r   r   r   r   r   r   scipy.stats._mannwhitneyur   r   common_testsr   r   rY   r   r  rA  rf  rv  r'   r'   r'   r(   <module>   s0    $:\   A v  